BRAINSia

BRAINSTools

A suite of tools for medical image processing focused on brain analysis

NAMICExternalProjects

A superbuild infrastructure to build all superbuild structures

AtlasWerks

A temporary location to help facilitate cleaning up this code again.

dcm-classifier

PigSNIPE

JALMMSE

github clone of https://www.nitrc.org/svn/jalmmse_dwi for slicer integration

SlicerFiducials

A project to manage code for manipulating slicer ficucial

ANTs

Advanced Normalization Tools (ANTs)

BIDSonym

a BIDS app for de-identification of neuroimaging data

BRAINSPydra

CTK

A set of common support code for medical imaging, surgical navigation, and related purposes.

DCMTK

WARNING: This is NOT the official upstream DCMTK git repository.

DTIPrep-1

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

DTIProcessToolkit

DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah

freesurfer

Neuroimaging analysis and visualization suite

GDCM

Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm

ITK

Insight Toolkit

ITKAdaptiveDenoising

ITKSoftwareGuide

A temporary sounding board for ITKSoftwareGuideWork

MetaIO

MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.

MONAI

AI Toolkit for Healthcare Imaging

MRParameterMaps

A repository based on this paper http://www.insight-journal.org/browse/publication/237

NiftyNet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

niral_utilities

NIRAL Utilities are open-source applications developped at UNC-Chapel Hill in the Neuro Image Research and Analysis Lab (NIRAL)

opencv

OpenCV GitHub Mirror

SINAPSE

SINAPSE is an interdisciplinary team of computer scientists, software engineers, and medical investigators.

Slicer

Multi-platform, free open source software for visualization and image computing.

tbb

ukftractography

UnbiasedNonLocalMeans

A copy of svn2git https://www.nitrc.org/svn/unlmeans --rootistrunk for testing