Hans Johnson's repositories
HASI
High-throughput Applications for Skeletal Imaging
RTK
Reconstruction Toolkit
drugsatfda-db
A shell script for creating a SQL database from weekly Drugs@FDA snapshot data.
Slicer
Multi-platform, free open source software for visualization and image computing.
itkwidgets
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
BRAINSTools-dashboard
A repo for managing the dashboard builds
MetaIO
MetaImage is the text-based tagged file format for medical images that resulted. We have now extended that file format to support a variety of objects that occur in medicine such a tubes (for vessels, needles, etc.), blobs (for arbitrary shaped objects), cubes, spheres, etc. The complete library is known at MetaIO.
itk-stubs
Python interface files that are readable by IDE's for static type inference
jsoncpp
A C++ library for interacting with JSON.
dcmtk
Official DCMTK Github Mirror
oneTBB
Official Threading Building Blocks (TBB) GitHub repository. For Commercial Intel® TBB distribution, please click here: https://software.intel.com/en-us/tbb
nda-tools
Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
cmake-cookbook
CMake Cookbook recipes.
pybids
Python tools for querying and manipulating BIDS datasets.
tensorflow-cmake
TensorFlow examples in C, C++, Go and Python without bazel but with cmake and FindTensorFlow.cmake
hw-activerecord-practice
Practice with ActiveRecord using RSpec
qt-easy-build
Scripts allowing to easily build Qt with OpenSSL support on Linux, macOS or Windows
CourseInBiomedicalImageAnalysisAndVisualization
Kitware Course in Biomedical Image Analysis and Visualization: ITK
zlib-ng
zlib replacement with optimizations for "next generation" systems.
homebrew-core
🍻 Default formulae for the missing package manager for macOS
brew
🍺 The Homebrew package manager
zstd
Zstandard - Fast real-time compression algorithm
afni
Official AFNI source and documentation
DELETEME
DELETEME
NiftyNet
An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
caffe
Caffe: a fast open framework for deep learning.