Greg Caporaso's repositories
q2-quality-control
A QIIME2 plugin for quality control of sequence and feature data
sicp-exercises
Code from SICP exercises.
developing-with-qiime2
Developing with QIIME 2
resources
A small site hosting our pre-trained classifiers so we don't need to rebuild the docs every time we have new ones.
q2-hello-world-test
Templated plugin.
q2-ancombc
qiime2 plugin for ANCOMBC
dev-docs
Developer documentation for QIIME 2
diataxis-documentation-framework
A systematic approach to creating better documentation.
nand-to-tetris-projects
"Nand-to-tetris" project code
qiime2.github.io
QIIME 2 project front page
docs
Source repository for https://docs.qiime2.org
q2cli
Command line interface for QIIME 2
scikit-bio
Core objects, functions and statistics for working with biological data in Python.
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
q2-types-genomics
QIIME 2 types for genomics plugins.
q2-demux
Map sequence barcodes to sample identifiers.
q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
q2-assembly
QIIME 2 plugin for (meta)genome assembly.
q2-composition
QIIME2 plugin for compositional data analysis