Greg Caporaso's repositories
dev-docs
Developer documentation for QIIME 2
developing-with-qiime2
Developing with QIIME 2
diataxis-documentation-framework
A systematic approach to creating better documentation.
nand-to-tetris-projects
"Nand-to-tetris" project code
q2-ancombc
qiime2 plugin for ANCOMBC
q2-assembly
QIIME 2 plugin for (meta)genome assembly.
q2-composition
QIIME2 plugin for compositional data analysis
q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
q2-hello-amplicon
Templated plugin.
q2-hello-world
Templated plugin.
q2-hello-world-test
Templated plugin.
q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
q2-quality-control
A QIIME2 plugin for quality control of sequence and feature data
q2-types-genomics
QIIME 2 types for genomics plugins.
qiime2.github.io
QIIME 2 project front page
resources
A small site hosting our pre-trained classifiers so we don't need to rebuild the docs every time we have new ones.
scikit-bio
Core objects, functions and statistics for working with biological data in Python.
sicp-exercises
Code from SICP exercises.