Greg Caporaso's repositories
Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
1955-11-05-sctest
Test of creating a Software Carpentry Workshop Website for the Teaching11 course
bc
Template for Software Carpentry bootcamp site repository.
clout
Automated testing system for development versions of QIIME, PyCogent, biom-format, and more.
DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
its-reference-otus
A reference set of ITS OTUs derived from UNITE for use with QIIME
ITTDMMAWHTTTF
1.21 jigawatts????
jiime
A Java port of the QIIME (http://www.qiime.org) microbial community analysis pipeline.
LS-BSR
Large scale Blast Score Ratio (BSR) analysis
massive-hipster
YOLO!!!
metoo
Staging ground for QIIME 2 development
pandas-cookbook
Recipes for using Python's pandas library
pycogent
PyCogent: Official repository for software and unit tests
pynast
Python Nearest Alignment Space Termination tool (PyNAST): Official repository for software and unit tests
pyqi
Tools for developing and testing command line interfaces in Python.
qiime.github.com
Webspace for QIIME
qiime_test_data
Test input and output for QIIME scripts.
scipy
Scipy library main repository
SIK-Guide-Code
Example code from the SparkFun Inventor's Kit Guide.
site
Software Carpentry web site.
sloan-office-r2r-variation
analyses of run-to-run variation in sloan office succession project data
taxster
taxster: assigning taxonomy to organisms you've never even heard of
workshop-template
Template for workshop websites.