caporaso-lab

mockrobiota

A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

sourcetracker2

SourceTracker2

tax-credit-data

raw data from tax-credit project

longitudinal-notebooks

autism-fmt1

genome-sampler

pretrained-feature-classifiers

q2-books

A prototype collection of JupyterBooks documenting QIIME 2

tax-credit-code

Microbiome benchmarking code and jupyter notebooks from the tax-credit project

caporaso-lab.github.io

Lab website

covid-ci

Continuous deployment of covid analyses using Concourse CI

crc-udca2

Analyses for UDCA Cancer Research submission

developing-with-qiime2

Your guide for writing, testing, and distributing QIIME 2 plugins, interfaces, and documentation.

ecuador-leptospira

exmp-paper1

Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)

SurveySync

Google Sheets Add-On to facilitate sync and validation of 3rd-party survey data

code-of-conduct

cookiecutter-qiime2-plugin

Template to help you create your new QIIME 2 plugin. 🚀

.github

az-covid-1

Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

gsheets-resource

humanure-paper1

q2-dwq2

Educational plugin for use with *Developing with QIIME 2* (DWQ2).

q2-phylogenomics

Phylogenomics toolkit and pipelines

qiime2.org-home

Prototype for updated qiime2.org homepage.

sample-classifier-ms

Manuscript describing q2-sample-classifier

sc18-poster

simple-remote-directory-resource

Concourse resource for handling remote directories

teaching-website-source

Sphinx source for my teaching website