colinbrislawn

Apollo-11

Original Apollo 11 Guidance Computer (AGC) source code for the command and lunar modules.

ec2instances.info

Amazon EC2 instance comparison site

cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

NanoPlot

Plotting scripts for long read sequencing data

glmm-course

Workshop exercises on regression, GLMs, mixed-effects models, and GLMMs in R

alluvial

Alluvial diagrams

osfclient

A python library and command-line client for file storage on OSF

Discovery-Hiring-Analyst-2016

Task description and data for candidates applying to be a Data Analyst in the Discovery department at Wikimedia Foundation.

AliView

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

lazyrmd

Render R Markdown outputs lazily

pmartR

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

ZIBR

Zero-Inflated Beta Random Effect model

Chiron

Tools and utilities for running Dockerized metagenomics tools in the Cloud

hundo

:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

MSGFgui

A gui overlay and extension for MSGFplus

q2-vsearch

vsearch plugin for QIIME 2

MSGFplus

An MSGF+ interface for R

germline_variant_snakemake

Snakemake workflow to call germline variant

gorg-classifier

Produce taxonomic and functional annotations of shotgun metagenomes, metatranscriptomes and metaproteome sequences.

og_consistency_pipeline

Consistency pipeline for hierarchies of orthologous groups (OGs) based on subsampling and tree reconciliation

taxxi

Taxonomy cross-validating by identity

hundo

Amplicon processing protocols

Proteomics

Strain_RW2

This is code and data associated with strain manuscript "The complete genome and physiological analysis of the eurythermal firmicute Exiguobacterium chiriqhucha strain RW2 isolated from a freshwater microbialite, widely adaptable to broad thermal, pH and salinity ranges" Frontiers

gdemux

demultiplex into groups (subsets) rather than individual sample files, by barcode

pacifica-cli

Python CLI Uploader for Pacifica

pacifica-notifications

Pacifica notification service to catch internal state of data and notify on that state

Kaiko_Publication

all the materials for the publication about the Kaiko

ZebrafishBMD