pnnl / hundo

:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

https://pnnl.github.io/hundo/

pnnl/hundo Issues

low priority, replace bbduk2.sh with bbduk.sh
Updated 5 years ago1
update blast so modern libssl is supported
Closed 5 years ago3
make ASVs using --cluster_unoise
Updated 5 years ago6
AssertionError: 3 columns passed, passed data had 47 columns
Closed 5 years ago2
Stuck at "Downloading remote packages"
Closed 5 years ago4
`hundo download` is broken
Closed 6 years ago
incomplete blastn results used during restarted job
Closed 6 years ago5
Consider performing taxonomy search using vsearch
Closed 6 years ago1
report downloads
Closed 6 years ago3
Consider performing MSA using MAFFT
Closed 6 years ago1
Consider compressing inlined files
Closed 6 years ago1
Improve concurrency in initial sample processing
Closed 6 years ago5
Concatenation fails with many files
Closed 6 years ago
Consider adding vsearch --fastq_eestats
Closed 7 years ago9