colinbrislawn

Colin J. Brislawn's starred repositories

OCRmyPDF

OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to be searched

Language:PythonMPL-2.012214 136 1111

Graphite

2D raster & vector editor that melds traditional layers & tools with a modern node-based, non-destructive, procedural workflow.

Language:RustApache-2.07083 58 710

sso-wall-of-shame

A list of vendors that treat single sign-on as a luxury feature, not a core security requirement.

Language:JavaScriptApache-2.0595 17 177

ggbeeswarm

Column scatter / beeswarm-style plots in ggplot2

Language:RGPL-3.0525 11 67

widyr

Widen, process, and re-tidy a dataset

Language:RNOASSERTION324 16 32

microbiomeMarker

R package for microbiome biomarker discovery

Language:RGPL-3.0162 11 115

MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

Language:R161 8 116

RASflow

RNA-Seq analysis workflow

Language:HTMLMIT101 6 37

snakemake-github-action

A Github action for running a Snakemake workflow

Language:ShellMIT51 3 18

speedyseq

Speedy versions of phyloseq functions

Language:RNOASSERTION42 4 79

CellBench

R package for benchmarking single cell analysis methods

Language:HTMLGPL-3.028 6 10

unite-train

🍄 Qiime2 ITS classifiers for the UNITE database

Language:HTMLBSD-3-Clause24 3 6

BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis

Language:PythonBSD-3-Clause22 5 46

SEIR_Covid_Vo

Language:RGPL-3.017 5 1

q2-krona

Implementation of Krona to QIIME2

Language:PythonMIT14 1 1

dockerfile-validator

GitHub action to validate the Dockerfile usign the dockerlint/hadolint.

Language:DockerfileNOASSERTION8 2 1

q2-mOTUs

Language:PythonGPL-3.08 2 4

pretrained-feature-classifiers

Language:ShellBSD-3-Clause3 5 6

NCT03893422

Data-sharing repository for Randomized Clinical Trial NCT03893422 conducted by Pendulum Therapeutics.

Language:HTMLCC0-1.03 50

Car_trip_vis

Project to plot OBD2 car scanner data in interactive visualization of data and location

Language:HTML200

zenodo-upload

upload big files to Zenodo using cURL, jq and bash

Language:ShellMIT2 20

terser

A terse syntax of function declaration in R. :gun:

Language:R2 2 1

Slankey_Blaseball_Team_Timelines

A visualiser for Blaseball teams over time as a Sankey plot, using Python, the Plotly library and the SIBR Datablase

Language:PythonBSD-3-Clause200

examples

Language:R200

microbiome_temporal_alignment

Language:Jupyter Notebook1 60

website

:musical_keyboard: :violin: Camerata Musica website

Language:CSS1 3 50

CR-2021

Language:Python1 7 3

multi-omics-study-in-CD-vs-ITB

Identification of shared and specific host-microbiota characteristics in Crohn’s disease and Intestinal tuberculosis using multi-omics integration

100

temporal-response-oil-exposure

Data and R code for the manuscript: Temporal variability of microbial response to crude oil exposure in the northern Gulf of Mexico

Language:RCC0-1.01 10

RASFlow-mod

Modified RASflow to run on the cluster

Language:RMIT100