Colin J. Brislawn (colinbrislawn)

colinbrislawn

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Company:@PNNL

Location:Pennsylvania

Home Page:https://colinbrislawn.github.io

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Colin J. Brislawn's starred repositories

OCRmyPDF

OCRmyPDF adds an OCR text layer to scanned PDF files, allowing them to be searched

Language:PythonLicense:MPL-2.0Stargazers:11722Issues:138Issues:1090

Graphite

2D raster & vector editor that melds traditional layers & tools with a modern node-based, non-destructive, procedural workflow.

Language:RustLicense:Apache-2.0Stargazers:5538Issues:54Issues:696

sso-wall-of-shame

A list of vendors that treat single sign-on as a luxury feature, not a core security requirement.

Language:JavaScriptLicense:Apache-2.0Stargazers:566Issues:17Issues:172

ggbeeswarm

Column scatter / beeswarm-style plots in ggplot2

Language:RLicense:GPL-3.0Stargazers:520Issues:11Issues:66

sentimentr

Dictionary based sentiment analysis that considers valence shifters

Language:RLicense:NOASSERTIONStargazers:415Issues:22Issues:131

microbiomeMarker

R package for microbiome biomarker discovery

Language:RLicense:GPL-3.0Stargazers:159Issues:11Issues:112

MicrobiotaProcess

:microbe: A comprehensive R package for deep mining microbiome

RASflow

RNA-Seq analysis workflow

Language:HTMLLicense:MITStargazers:100Issues:6Issues:37

covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

Language:HTMLLicense:MITStargazers:53Issues:3Issues:10

snakemake-github-action

A Github action for running a Snakemake workflow

Language:ShellLicense:MITStargazers:49Issues:3Issues:18

speedyseq

Speedy versions of phyloseq functions

Language:RLicense:NOASSERTIONStargazers:41Issues:4Issues:75

CellBench

R package for benchmarking single cell analysis methods

Language:HTMLLicense:GPL-3.0Stargazers:28Issues:6Issues:10

BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis

Language:PythonLicense:BSD-3-ClauseStargazers:22Issues:5Issues:46
Language:RLicense:GPL-3.0Stargazers:17Issues:0Issues:0

q2-krona

Implementation of Krona to QIIME2

Language:PythonStargazers:11Issues:1Issues:0

dockerfile-validator

GitHub action to validate the Dockerfile usign the dockerlint/hadolint.

Language:DockerfileLicense:NOASSERTIONStargazers:7Issues:0Issues:0
Language:PythonLicense:GPL-3.0Stargazers:7Issues:2Issues:4

gorg-classifier

Produce taxonomic and functional annotations of shotgun metagenomes, metatranscriptomes and metaproteome sequences.

Language:NextflowLicense:MITStargazers:4Issues:0Issues:0
Language:ShellLicense:BSD-3-ClauseStargazers:3Issues:0Issues:0

NCT03893422

Data-sharing repository for Randomized Clinical Trial NCT03893422 conducted by Pendulum Therapeutics.

Language:HTMLLicense:CC0-1.0Stargazers:3Issues:0Issues:0

Car_trip_vis

Project to plot OBD2 car scanner data in interactive visualization of data and location

Language:HTMLStargazers:2Issues:0Issues:0

zenodo-upload

upload big files to Zenodo using cURL, jq and bash

Language:ShellLicense:MITStargazers:2Issues:2Issues:0

terser

A terse syntax of function declaration in R. :gun:

Slankey_Blaseball_Team_Timelines

A visualiser for Blaseball teams over time as a Sankey plot, using Python, the Plotly library and the SIBR Datablase

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:0Issues:0
Language:Jupyter NotebookStargazers:1Issues:0Issues:0
Language:PythonStargazers:1Issues:0Issues:0

temporal-response-oil-exposure

Data and R code for the manuscript: Temporal variability of microbial response to crude oil exposure in the northern Gulf of Mexico

Language:RLicense:CC0-1.0Stargazers:1Issues:0Issues:0
License:BSD-2-ClauseStargazers:1Issues:0Issues:0
Language:RStargazers:1Issues:0Issues:0

RASFlow-mod

Modified RASflow to run on the cluster

Language:RLicense:MITStargazers:1Issues:0Issues:0