globalbioticinteractions

globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

nomer

maps identifiers and names to other identifiers and names

globalbioticinteractions.github.io

source files for GloBI website

template-dataset

Template species interaction data repository compatible with globalbioticinteractions.org

elton

Access, review and index existing species interaction datasets

name-alignment-template

align names with known taxonomic resources

globinizer

Checks whether datasets are ready for GloBI indexing

scan

Symbiota Collections of Arthropods Network (SCAN) Registry

usnm

Configuration for GloBI to index collections of the National Museum of Natural History, Smithsonian Institution

virion

GloBI configuration to index "The Global Virome in One Network (VIRION): an atlas of vertebrate-virus associations"

carvalheiro2023

GloBI configuration to help index Luisa Carvalheiro, José Augusto Salim, Filipi Soares, Debora Drucker. 2023. WorldFAIR pilot data from: VisitationData_Luisa_Carvalheiro.

AMNH-hymenoptera

bourlat2023

configuration for GloBI to index: Bourlat SJ, Koch M, Kirse A, Langen K, Espeland M, Giebner H, Decher J, Ssymank A, Fonseca VG (2023) Metabarcoding dietary analysis in the insectivorous bat Nyctalus leisleri and implications for conservation. Biodiversity Data Journal 11: e111146. https://doi.org/10.3897/BDJ.11.e111146

dopi

index configuration to help GloBI index The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations at https://www.sussex.ac.uk/lifesci/ebe/dopi

ecdysis

globi-taxon-names

list of manual taxonomic name mappings and taxonomic stop words

hivetracks2023

HiveTracks WorldFAIR Test Data

kalro2023

A review of the status of web-based African Plant-Pollinator Interaction data

knowledgepixels

Configuration to enable GloBI indexing of species interactions published via knowledgepixel nanopubs and pensoft Biodiversity Data Journal

MojaveFoodWeb

The files in this repository are paired with the paper Potential extinction cascades in a desert ecosystem: linking food web interactions to community viability

ncbi-paramyxoviridae

configuration to help GloBI index NCBI Paramyxoviridae host associations Hatcher et al. 2017 https://doi.org/10.1093/nar/gkw1065

ncbi-virus

GloBI configuration to index Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer, J. Rodney Brister, Virus Variation Resource – improved response to emergent viral outbreaks, Nucleic Acids Research, Volume 45, Issue D1, January 2017, Pages D482–D490, https://doi.org/10.1093/nar/gkw1065

sib-colombia

configuration to help index species interaction data hosted by SiB Colombia

traitwebs

Supplementary tables

unhc-unhc

universityces2023

configuration to help index Acevedo JF, Agudelo-Zapata MC, Álvarez Correa C, Bedoya Duque C, Cardona-Duque J, Idárraga M, Marentes-Herrera E, Molina JA & Vélez-Naranjo M. 2023. Dimensiones de la biodiversidad del Refugio de Vida Silvestre Alto de San Miguel. Universidad CES-Secretaría de Medio Ambiente de Medellín, 2023.

usda-fungus-host

configuration to help index Farr, David F.; Rossman, Amy Y.; Castlebury, Lisa A. (2021). United States National Fungus Collections Fungus-Host Dataset. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1524414.

usgs-pollinator-library

Configuration to help Global Biotic Interactions (GloBI, https://globalbioticinteractions.org) index the United States Geological Survey (USGS) Pollinator Library. https://www.npwrc.usgs.gov/pollinator.

virjendb

VirJenDB: a central hub connecting virus researchers to publicly available virus resources, metadata and sequences. 2024. https://virjendb.org/Downloads

zmo-gyrodactylus

Bachmann L (2021). Artsprosjektet - Gyrodactylus. Version 1.10. University of Oslo.