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Virtual Fly Brain (VirtualFlyBrain)

Virtual Fly Brain

VirtualFlyBrain

Geek Repo

a data integrator for Drosophila neurobiology

Home Page:https://www.virtualflybrain.org/

Twitter:@virtualflybrain

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Virtual Fly Brain's repositories

neo4j2owl

Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.

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training

Repository for training notebooks

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VFB_connect

A library for querying VFB servers (neo4j, owlery, solr)

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geppetto-vfb

VFB (v2) application

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VFB2

Virtual Fly Brain Documentation Site

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VFB_reporting_results

Repository containing the results of various data change and consistency checking.

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2024-connectomics-hackathon

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curation

A repository of records specifying curation into the VFB Knowledge Base

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FlyLightLarvalData

a webserver to host the released raw FlyLight Larval expression data

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neuPrint

tools for importing connectome data into neo4j

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org.geppetto.frontend

Geppetto frontend bundle (Web Application)

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owltools

OWLTools

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transcriptomics_2_connectomics_hackathon

A repo for hacking for the 2024 transcriptomics to connectomics hackathon

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uk.ac.vfb.geppetto

Virtual Fly Brain geppetto code

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vfb-data-ingest-ui

The UI for uploading image metadata, sitting on top of the vfb-data-ingest-api.

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vfb-driver-ontology

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vfb-EPseq-ontology

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vfb-neurotransmitter-predictions

Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.

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vfb-pipeline-collectdata

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vfb-pipeline-dumps

Pipeline that creates dumps from the triplestore for consumption by the downstream services

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vfb-pipeline-polishing

Final cypher steps after complete pipeline load

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vfb-pipeline-validatekb

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vfb-scRNAseq-gene-annotations

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vfb-scRNAseq-ontology

An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.

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VFB_connectomics_import

A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.

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vfb_expression_annotator

VFB Expression Annotator tags classes based on the VFB clas expression config

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VFB_json_schema

VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests

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VFB_neo4j

A python package for writing schema-compliant content to VFB neo4J DBs

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VFB_reporting

Scripts for reporting on the state of VFB content and pipeline

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vfb_rest

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