Virtual Fly Brain

neo4j2owl

Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.

training

Repository for training notebooks

VFB_connect

A library for querying VFB servers (neo4j, owlery, solr)

geppetto-vfb

VFB (v2) application

VFB2

Virtual Fly Brain Documentation Site

VFB_reporting_results

Repository containing the results of various data change and consistency checking.

VfbBridgingRegistrations

Bridging registrations to convert between different Drosophila template brains

curation

A repository of records specifying curation into the VFB Knowledge Base

Docker-VFB-Neo4j-ProductionDB

Neo4j server loaded with the VFB Production DB

FlyLightLarvalData

a webserver to host the released raw FlyLight Larval expression data

jenkins

jenkins with extra dependancies

neuPrint

tools for importing connectome data into neo4j

org.geppetto.frontend

Geppetto frontend bundle (Web Application)

owltools

OWLTools

uk.ac.vfb.geppetto

Virtual Fly Brain geppetto code

vfb-data-ingest-api

This repository contains the REST API code for the Data Ingest API

vfb-driver-ontology

vfb-extension-ontology

A small application ontology used by VFB.

vfb-neurotransmitter-predictions

Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.

vfb-pipeline-integration-api

vfb-pipeline-polishing

Final cypher steps after complete pipeline load

vfb-scRNAseq-gene-annotations

vfb-scRNAseq-ontology

An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.

VFB_connect_api

API wrapping VFB_connect library

vfb_expression_annotator

VFB Expression Annotator tags classes based on the VFB clas expression config

VFB_json_schema

VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests

VFB_neo4j

A python package for writing schema-compliant content to VFB neo4J DBs

vfb_rest

VFBquery

virtual-fly-brain

VFB v3 development