Giters
Broad Institute (broadinstitute)

Broad Institute

broadinstitute

Organization data from Github https://github.com/broadinstitute

Broad Institute of MIT and Harvard

Location:Cambridge, MA

Home Page:http://www.broadinstitute.org/

GitHub:@broadinstitute

Twitter:@broadinstitute

Broad Institute's repositories

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

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long-read-pipelines

Long read production pipelines

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ml4h

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gnomad_qc

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single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

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viral-pipelines

viral-ngs: complete pipelines

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SpliceAI-lookup

Website for checking a variant's SpliceAI, Pangolin, and other scores:

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monorepo

Compendium of tools for the Imaging Platform

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warp-tools

This repository contains all containers that WARP uses.

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viral-assemble

viral-ngs: genome assembly and scaffolding

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juniper

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terraform-shared

Reusable Terraform modules

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workbench-libs

Workbench utility libraries

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2022_PERISCOPE

This repository contains all supporting analyses and files for Ramezani, Weisbart, Bauman, and Singh, et al. "A genome-wide atlas of human cell morphology".

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gnomad-browser-toolkit

Components for building genomic data browsers

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jump_hub

The one-stop-shop for Morphological Profiling and JUMP Cell-Painting

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viral-core

viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux

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viral-phylo

viral-ngs: phylogenetics, annotation, intrahost variants

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seqr-helm

Helm charts for the seqr project

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backstage

Broad Institute Engineering Portal is an Internal Developer Platform (Spotify Backstage by another name)

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liftover

Code for liftover.broadinstitute.org which makes it easier to look up genomic liftover coordinates for a variant, position, or interval.

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viral-classify

viral-ngs: taxonomic identification, classification, and filtering steps

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idmp-fungal-pipelines

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submissions

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bitstore-app

BITStore AppEngine App

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celldega_Xenium_Prime_Human_Skin_FFPE_outs

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depmap-omics-long-read-rna

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juniper-analyses

Code to run analyses and generate figures for JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale

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Methyl-CODEC

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tgg-sredocs

Documentation for TGG's public infrastructure deployment tools

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