Broad Institute

infercnv

Inferring CNV from Single-Cell RNA-Seq

cellpainting-gallery

Cell Painting Gallery

chronos

Modeling of time series data for CRISPR KO experiments

SpliceAI-lookup

Website for checking SpliceAI and Pangolin scores:

exome-results-browsers

Results browsers for case-control studies of psychiatric diseases done at the Broad Institute

regional_missense_constraint

Code to calculate regional missense constraint

agora

It's a methods repository!

taiga

Taiga for Dataset management

celligner

tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

dig-bioindex

BIO index for genetic records stored in S3 and FastAPI server.

python-sudoers

Python library for parsing a Linux sudoers file

gumbo_client

python client for DepMap Gumbo database

homebrew-dsp

A brew tap for tools and formula that DSP uses that aren't ready for publishing to homebrew-core

openidc-terra-proxy

OpenIDC proxy to be used for all Terra services

SingleCell_Morphological_Analysis

Basic analysis and visualization of CellProfiler single cell profiles.

TOPMed_AFib_pipeline

anvil_tdr_ingest

Resources related to ingesting AnVIL datasets into Terra Data Repository

eqtl_pipeline_terra

scripts for eQTL pipeline in Terra

MorphEm

python-alteon

Python interface to the Radware Alteon REST API

seqr-helm

Helm charts for the seqr project

rl_reasoner

reinforcement learning reasoner

broad-epi-repeats-analysis

Snakemake wrapper to run SQUIRE pipeline

cms2-work

Gather in one place various repos and files related to CMS2.0 work.

mccarroll-cromwell

proteomics-DIA-VMCollapsing

Performs VM collapsing on Spectronaut and DIA-NN data

puppet-ulimit

Puppet module to manage Ulimit on Linux hosts

python-clearpass

Python library for interfacing with the Aruba ClearPass REST API

python-standard-bits

The standard Python setup for BITS

tgg-terraform-modules