broadinstitute / viral-classify

viral-ngs: taxonomic identification, classification, and filtering steps

broadinstitute/viral-classify Issues

expose more blast parameters on command line
Closed 2 months ago
add Lydia perl scripts to docker container
Closed 7 months ago
Expose kraken2 --minimum-hit-groups param
Updated a year ago
kraken build typo
Closed 4 years ago3
decouple read deduplication from taxonomic filtration
Closed 4 years ago1
deplete_bwa_bam removes all single-ended reads
Closed 4 years ago1
add dust python command
Closed 4 years ago1
add krakenuniq summary report filter
Updated 5 years ago