bihealth / sodar-server

SODAR: System for Omics Data Access and Retrieval

https://github.com/bihealth/sodar-server

bihealth/sodar-server Issues

Cleanup and prepare v0.14.3
Updated 20 days ago
Add retrying for BatchCalculateChecksumTask exceptions
Updated 23 days ago
Add logging for BatchCalculateChecksumTask exceptions
Closed 23 days ago1
Add opt-out settings for email notifications
Updated a month ago
Upgrade to django-sodar-core v1.0.0
Updated a month ago
Upgrade dependencies for v0.14.3
Updated a month ago
Fix README badge rendering
Closed a month ago1
IGV session merging opens a new session
Updated a month ago3
Add support for multiple VCF files in germline IGV sessions
Updated 2 months ago
Update REST API versioning for SODAR Core v1.0
Updated 2 months ago
Grant contributors and guests read access to all landing zones within project
Updated 2 months ago
Grant owners and delegates iRODS read/write access to contributor zones
Updated 2 months ago
Add documentation for Cyberduck iRODS access
Closed 2 months ago1
Allow setup behind reverse proxy
Closed 2 months ago1
Review irodsbackend API and session handling in taskflowbackend
Updated 2 months ago1
Source cell editing not working in assay table after row insert
Closed 2 months ago2
Process not linked to existing node by name when adding new row in sheet editor
Closed 2 months ago5
Duplicate rows created on ISA-Tab export when splitting with unnamed data files
Updated 2 months ago1
Render pooled/split rows on row insert in sheet editor
Updated 2 months ago
Handle missing family column in germline study cache update
Closed 2 months ago4
IGV omit setting defaults not correctly set on project creation
Closed 2 months ago1
Rename get_igv_omit_override(), refactor use
Closed 2 months ago1
Add glob pattern and path support for SHEETS_IGV_OMIT_*
Closed 2 months ago1
Add additional functionality to IGV omit patterns for VCF/BAM/CRAM files
Closed 2 months ago1
Add optional detailed landing zone taskflow output
Updated 3 months ago
Project lock failure can update status of finished landing zone with rapid request spamming
Closed 3 months ago1
Add landingzones taskflow task tests
Updated 3 months ago
Germline study app helper used in cancer study app plugin tests
Closed 3 months ago1
Add CRAM file support for IGV in study plugins
Closed 3 months ago2
Add landing zone taskflow queue?
Updated 3 months ago
Combine IrodsDataRequestModifyMixin timeline helpers
Closed 3 months ago1
Add extra data to IrodsDataRequest create/update timeline events
Closed 3 months ago1
File potentially lost if iRODS connection times out during landing zone moving
Updated 3 months ago
Process name editing not enabled by default when adding new row in sheet editor
Closed 3 months ago1
Crash in landing_zone_create flow with large project and create/restrict collections
Closed 3 months ago3
Uncaught exceptions in SetAccessTask
Closed 3 months ago1
Timeline status update may fail on landing zone deletion
Updated 3 months ago4
Upgrade to django-sodar-core v0.13.4
Closed 3 months ago1
Landing zone status updating not working in project details card
Closed 3 months ago1
Refactor IrodsStatisticsAjaxView and related JQuery
Closed 3 months ago1
Add landing zone counts by status type in siteinfo
Closed 3 months ago1
Add taskflowbackend settings to siteinfo
Closed 3 months ago1
Update readthedocs setup for building manual
Closed 3 months ago2
Increase default taskflow iRODS connection timeout
Closed 3 months ago1
Sheet creation error from slashes in investigation title
Closed 3 months ago2
Add assay based access control to sample sheet data
Updated 3 months ago
Properly enable superuser landing zone controls for locked zones
Updated 3 months ago
Validate and sanitize IRODS_ROOT_PATH in IrodsAPI.get_root_path()
Closed 3 months ago1
Use get_root_path() consistently within IrodsAPI
Closed 3 months ago1
Invalid alternative root path forming in IrodsAPI.get_path()
Closed 3 months ago1