Alessandro Felder's repositories
brainrender-napari-feedstock
A conda-smithy repository for brainrender-napari.
rse-best-practices-playground
A temporary repo to play with coding good practice concepts (BIIG hackday 2024)
brainreg-feedstock
A conda-smithy repository for brainreg.
bg-atlasapi-feedstock
A conda-smithy repository for bg-atlasapi.
usrse.github.io
US RSE umbrella web page
napari
napari: a fast, interactive, multi-dimensional image viewer for python
Trabecular_Segmentation_Avizo
Method for automatically segmenting trabecular and cortical bone in CT scans, using Avizo.
test-pytest-qt-raises
toy repo to help with debugging pytest-qt
napari-nwb
A napari reader for JPGs from a remote NWB file
napari-nwb-explore
Some jupyter notebooks exploring reading JPGs from remote NWB repos
dummy-gh-actions
to do some quick tests of github actions
quarto-workshop
Quarto Workshop for RSE Conf 2022
libsbml
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
times-tests
An exercise to practice writing tests
cellfinder
Automated 3D cell detection and registration of whole-brain images
earthquakes
Exercise for working with earthquakes data
rsd-engineeringcourse
Course materials for Research Software Engineering course.
epitools-matlab
EpiTools image processing toolkit for MATLAB
hdf5
Official HDF5® Library Repository
2021-07-19-UCL-software-carpentry-online
Online Software Carpentry workshop, 19th-22nd July 2021, "mornings" only.
hackday-pybioimage
Repo for UCL Festival of Code Hackday python group working on modernizing and extending the python bioimage analysis tutorial.