BoneJ

BoneJ2

Plugins for bone image analysis

bonej

BoneJ 1.x releases. For up-to-date code see https://github.com/bonej-org/BoneJ2

bonej-scripts

Helper scripts and macros using BoneJ

BoneJ2Wiki

Files for the wiki of the BoneJ2 repo

imagej-common

ImageJ core data model

imagej-ops

ImageJ Ops: "Write once, run anywhere" image processing

ImageJFractalDimension

Estimates fractal dimension of 2D and 3D images, including topographic surface maps

imglib2-ij

Translation between ImgLib & ImageJ data structures (both 1.x and 2)

javadoc.scijava.org

Javadocs for SciJava projects

scifio

SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

scijava-common

A plugin framework and application container with built-in extensibility mechanism

Skeletonize3D

ImageJ/Fiji plugin to skeletonize binary images

VIB

AnalyzeSkeleton

ImageJ/Fiji plugin to analyze 2D and 3D skeleton images

imagej-legacy

Backwards compatibility with ImageJ 1.x

imagej-tutorials

ImageJ2 programming examples

imagej.github.io

GitHub Pages for ImageJ

list-of-update-sites

The update sites ImageJ knows about automatically

LocalThickness

pom-scijava

Friendly base POM for all SciJava-based software

scifio-tutorials

Tutorials for use of SCIFIO and its plugins.