aertslab / AUCell

AUCell: score single cells with gene regulatory networks

aertslab/AUCell Issues

Error in signif(trhAssignment, 3)
Closed 5 years ago2
Q: AUCell applicable to imaging-based SRT data?
Updated 4 months ago
Error while running TILPRED
Updated 4 months ago1
At risk of removal from Bioconductor
Updated 6 months ago9
why maxAUC calculated in such a complicated way ?
Closed 8 months ago
Applicability to Bulk RNASeq
Updated a year ago1
could not find function "AUCell_run"
Updated a year ago2
R 4.3_Error in .read_block_OLD(x, viewport, as.sparse = as.sparse) : could not find function ".read_block_OLD"
Closed a year ago3
AUCell_calcAUC function failed, can not find error message
Updated a year ago
Why filter gene sets after calculating AUC?
Updated a year ago
Error in matrix(ind, nrow = m, ncol = rank, dimnames = dnms) : invalid 'nrow' value (too large or NA)
Updated a year ago
Error and warning in AUCell_exploreThresholds
Updated 2 years ago2
could not find function "AUCell_run"
Closed 2 years ago
Binarization thresholds
Updated 2 years ago
Breaking change in AUCell_buildRankings() on dgCMatrix objects
Updated 2 years ago7
Can't find function AUCell_run
Closed 2 years ago4
Set seed for AUCell build rankings
Closed 2 years ago1
thresholds for comparibility from one dataset to another ?
Closed 2 years ago2
AUCell Threshold setting
Closed 2 years ago1
Condition comparison in AUCell
Closed 2 years ago1
GO and pathway enrichment analysis
Closed 2 years ago1
Run AUCell_buildRankings on HVG?
Closed 2 years ago1
Clustering enrichment results
Closed 2 years ago1
Determining 'active' pathways en masse
Closed 2 years ago1
AUCell_buildRankings() is broken in BioC 3.15
Closed 2 years ago2
DelayedArray support and block processing
Closed 2 years ago1
Error in using multi cores
Closed 2 years ago
AUCell ranking test
Closed 2 years ago1
aucThr and onColor parameter are invalid in AUCell_plotHist function
Closed 2 years ago
Mistake in "outlierOfGlobal" calculation in priv_auc.assignmnetThreshold_v6.R
Closed 2 years ago1
Questions?
Updated 2 years ago
Questions?
Closed 2 years ago
Valid 'mctype': 'snow' or 'doMC'
Closed 3 years ago11
should the gene expression matrix be normalised?
Closed 3 years ago2
determining thresholds
Closed 3 years ago1
Building cell rankings with very large expression matrix
Closed 4 years ago1
Avoid overwriting BiocGenerics::cbind
Closed 4 years ago1
aucellRankings - merging two object
Closed 5 years ago6
Recommended for use on Aggregated data?
Closed 5 years ago1
Error in min(thisTrh, 1) : invalid 'type' (list) of argument
Closed 6 years ago
All zeros for regulon's AUC
Closed 6 years ago1
building cell rankings does not work with huge matrices that has to be stored as sparse matrices (e.g.: dgCMatrix).
Closed 6 years ago1