Giters

aertslab / AUCell

AUCell: score single cells with gene regulatory networks

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

GO and pathway enrichment analysis

nfancy opened this issue · comments

commented

Hi,

Thanks for the package. This is more of a query than an issue. I was wondering if it would be appropriate for GO and pathway enrichment analysis similar to GSEA. If yes, what method do you recommend for p-value calculation and multiple testing correction? What is your recommendation in terms of effect size calculation of the enrichment score base on a trait (for example Disease vs Control)?

Looking forward to hearing from you soon.

Nurun

commented

Sorry, for questions on how to use the package, see:
#26