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Anisha Thind (a-thind)

a-thind

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Company:Barts Cancer Institute

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Anisha Thind's starred repositories

CAFclassification

License:MITStargazers:6Issues:0Issues:0

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

Language:RLicense:NOASSERTIONStargazers:416Issues:0Issues:0

Decosus

Consensus deconvolution and abudance

Language:RLicense:GPL-3.0Stargazers:2Issues:0Issues:0

sailor

CWL+Singularity implementation of an RNA editing workflow

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:39Issues:0Issues:0

isomiRs

analyze isomiRs from seqbuster tool

Language:RLicense:MITStargazers:8Issues:0Issues:0

degust

An interactive web-tool for RNA-seq analysis

Language:JavaScriptLicense:GPL-3.0Stargazers:65Issues:0Issues:0

QuickMIRSeq

Integrated and Interactive microRNA-seq Analysis Report

Language:HTMLStargazers:3Issues:0Issues:0

ConsensusTME

ConsensusTME Gene Sets and R Script

Language:RLicense:GPL-3.0Stargazers:37Issues:0Issues:0

SpatialDecon

The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)

Language:RLicense:MITStargazers:31Issues:0Issues:0

standR

Spatial transcriptomics analyses and decoding in R

Language:RLicense:NOASSERTIONStargazers:15Issues:0Issues:0

htseq-clip

a toolset designed for the processing and analysis of eCLIP/iCLIP dataset

Language:PythonLicense:MITStargazers:3Issues:0Issues:0

iCount

iCount, protein-RNA interaction analytics

Language:PythonLicense:NOASSERTIONStargazers:22Issues:0Issues:0

peka

Find motifs enriched around prominent crosslinks

Language:PythonLicense:GPL-3.0Stargazers:5Issues:0Issues:0

eulerr

Area-Proportional Euler and Venn Diagrams with Ellipses

Language:RLicense:GPL-3.0Stargazers:128Issues:0Issues:0

sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

Language:RLicense:GPL-3.0Stargazers:202Issues:0Issues:0

ggvenn

Venn Diagram by ggplot2, with really easy-to-use API.

Language:RLicense:NOASSERTIONStargazers:157Issues:0Issues:0

EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling

Language:RStargazers:389Issues:0Issues:0

ggstatsplot

Enhancing {ggplot2} plots with statistical analysis 📊📣

Language:RLicense:GPL-3.0Stargazers:1947Issues:0Issues:0

bedtools2

bedtools - the swiss army knife for genome arithmetic

Language:CLicense:MITStargazers:914Issues:0Issues:0

ComplexHeatmap

Make Complex Heatmaps

Language:RLicense:NOASSERTIONStargazers:1250Issues:0Issues:0

scCustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Language:RLicense:GPL-3.0Stargazers:181Issues:0Issues:0

maser

Mapping Alternative Splicing Events to pRoteins

Language:RLicense:NOASSERTIONStargazers:18Issues:0Issues:0

rmats-turbo

Language:C++License:NOASSERTIONStargazers:208Issues:0Issues:0

PAIRADISE

Paired Replicate Analysis of Allelic Differential Splicing Events

Language:PythonStargazers:11Issues:0Issues:0

GSVA

Gene set variation analysis

Language:RStargazers:173Issues:0Issues:0

msigdbr

MSigDB gene sets for multiple organisms in a tidy data format

Language:RLicense:NOASSERTIONStargazers:66Issues:0Issues:0

fgsea

Fast Gene Set Enrichment Analysis

Language:RLicense:NOASSERTIONStargazers:348Issues:0Issues:0

rnaseqGene

RNA-seq workflow: exploratory analysis and differential expression

Language:TeXStargazers:66Issues:0Issues:0

tximport

Transcript quantification import for modular pipelines

Language:RStargazers:131Issues:0Issues:0

DESeq2

Differential expression of RNA-seq data using the Negative Binomial

Language:RStargazers:339Issues:0Issues:0