Giters
Xinglab
/
rmats-turbo
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16
Issues:
364
Forks:
53
Xinglab/rmats-turbo Issues
RNA-seq quality report sequence duplication level
Updated
3 months ago
A3SS and A5SS
Closed
3 months ago
Comments count
2
SE events in output table do not match to the GTF annotation
Closed
3 months ago
Comments count
5
uniformative error reading GTF
Closed
3 months ago
Comments count
2
rMATS long runtime
Closed
3 months ago
Comments count
2
Can not install rMATS 4.2.0 when the environment is python 3.11
Updated
3 months ago
Comments count
16
Error while running rmats.py
Updated
3 months ago
Comments count
26
the chr column is not normal
Closed
3 months ago
Comments count
2
the sequencing library is vague
Updated
3 months ago
Comments count
1
"IJC_SAMPLE_1 SJC_SAMPLE_1 IJC_SAMPLE_2 SJC_SAMPLE_2" in the EVENT.MATS.JCEC.txt file is 0, while the value of the five columns "PValue FDR IncLevel1 IncLevel2 IncLevelDifference" five columns have a value of NA.
Closed
4 months ago
Comments count
4
The value of the four columns "IJC_SAMPLE_1 SJC_SAMPLE_1 IJC_SAMPLE_2 SJC_SAMPLE_2" in the EVENT.MATS.JCEC.txt file is 0, while the value of the five columns "PValue FDR IncLevel1 IncLevel2 IncLevelDifference" five columns have a value of NA.
Updated
4 months ago
Comments count
2
The new version of PAIRADISE is not compatible with the current pair script
Updated
4 months ago
Comments count
1
No intron retention detected in a manually made genome and annotation file
Updated
4 months ago
Comments count
3
readLength warning
Updated
4 months ago
Comments count
5
install rmats turbo
Closed
4 months ago
Bioconda install v4.3.0- multiple errors
Closed
4 months ago
Comments count
2
Why the `summary.txt` is empty?
Updated
4 months ago
Comments count
11
unrecognized arguments: --darts-model
Closed
4 months ago
Comments count
2
Few questions regarding rMATS
Updated
5 months ago
Comments count
5
rMATS skipping 2 exons that are expressed
Closed
5 months ago
Comments count
4
Comparison of multiple groups in rMATS
Updated
5 months ago
Comments count
4
ValueError: invalid literal for int() with base 10
Closed
5 months ago
Comments count
1
Discrepancy Between rMATS-turbo Results and IGV Visualization
Updated
5 months ago
Comments count
3
UnicodeDecodeError: 'ascii' codec can't decode byte 0x8b in position 1: ordinal not in range(128)
Updated
5 months ago
Comments count
1
Does rmats-turbo work on mac OS?
Updated
5 months ago
Comments count
3
What is the basic principle behind rmats detection of individual events?
Updated
5 months ago
Comments count
3
zero mapped rates uisng rmats
Updated
5 months ago
Comments count
3
`import rmatspipeline`: ImportError: rmats_turbo_v4_3_0/rmatspipeline.cpython-310-x86_64-linux-gnu.so: undefined symbol: _ZNK8BamTools12BamAlignment10GetTagTypeERKSsRc
Updated
6 months ago
Comments count
4
libRlapack.so: cannot open shared object file: No such file or directory
Updated
6 months ago
Comments count
2
Can't find 'rmatspipeline' to import 'run_pipe'
Updated
6 months ago
Comments count
8
Error in readRDS(file) : cannot read workspace version 3 written by R 4.0.5; need R 3.5.0 or newer
Closed
6 months ago
Comments count
2
Not detectable
Updated
6 months ago
Comments count
3
no files had been generated in prep and post
Closed
6 months ago
Comments count
2
Extracting sequence from the output of rMATS
Updated
6 months ago
Comments count
2
What GTF file should I be using for mapped BAM files?
Updated
6 months ago
Comments count
1
JCEC and JC in "summary.txt"
Updated
6 months ago
Comments count
1
All output files have only headers
Updated
6 months ago
Comments count
6
Is it reasonable to convert post-processed files to GTF for rmats?
Closed
7 months ago
Comments count
2
Failed to open BAM files, all results files are emtpy, changed to --outSAMtype BAM Unsorted
Closed
7 months ago
Comments count
2
Error running rMATS in ubuntu with conda
Closed
7 months ago
Comments count
4
drastic difference in output 4.1.2 vs 4.0.2 (not -read-length related...?)
Updated
7 months ago
Comments count
3
Dont understand output of "read_outcomes_by_bam.txt" or "summary.txt"
Updated
7 months ago
Comments count
2
Can rmats analyze alternative first exon?
Updated
7 months ago
Comments count
1
cannot find rmatspipeline
Updated
7 months ago
Comments count
9
rmats.py not opening text file
Updated
8 months ago
Comments count
1
Explanation of .rmats file
Updated
8 months ago
Comments count
1
rMats changes gtf/bam coordinates
Closed
8 months ago
Comments count
2
Issue:Should we use the mapped Bam or the deduplicated Bam file?
Updated
8 months ago
Comments count
3
Quick question regarding reruns
Updated
8 months ago
Comments count
1
Running prep and post separately or together
Updated
9 months ago
Comments count
1
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