omnideconv / immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

https://omnideconv.org/immunedeconv/index.html

omnideconv/immunedeconv Issues

None identical gene between eset and reference had been found. Check your eset using: intersect(rownames(eset), rownames(reference))
Updated 3 months ago2
Immunedeconv terminates for (non-)duplicate gene symbols
Updated 3 months ago2
Same error as described in issue 79
Closed 3 months ago2
Immunedeconv terminates for (non-)duplicate gene symbols
Updated 4 months ago7
Error message when running CIBERSORT
Updated 4 months ago16
Hi what is the original article to BASE method for deconvolute_mouse()?
Closed 5 months ago1
cibersort can not run
Closed 6 months ago7
Error in if (max(Y) < 50) { : missing value where TRUE/FALSE needed previous fix not working
Closed 6 months ago1
The `path` argument of `write_tsv()` is deprecated as of readr 1.4.0.
Updated 6 months ago
Deconvolution analysis - N of 1
Updated 7 months ago
[Please-fix-this] Annotation discrepancies in the <immunedeconv::cell_type_map>
Updated 7 months ago5
Error in `quanTIseq` Deconvolution: Duplicate 'row.names' Not Allowed
Updated 8 months ago1
map_result_to_celltypes consensus_tme
Updated 8 months ago
Error by using mouse_genes_to_human function
Updated 8 months ago1
Feature request: BLADE deconvolution method
Updated 9 months ago
Error in deconvolute_cibersort
Closed 9 months ago7
Error running cibersort
Closed a year ago3
Unable to load immunedeconv
Updated a year ago12
deconvolute_consensus_tme won't work with "Unfiltered" indications
Closed a year ago1
Error in Installation of R Package
Closed a year ago2
genes not being identical between reference and my gene expression data
Closed a year ago15
Support for mouse deconvolution
Closed 2 years ago3
Wrong names of ESTIMATE scores
Closed 2 years ago7
Issue with ESTIMATE inner_join()
Updated 2 years ago3
quanTIseq update
Closed 2 years ago2
TPM-normalized
Updated 2 years ago1
GLIBCXX_3.4.30 not found when trying to use timer
Updated 2 years ago1
Error in the mapping of cell types
Closed 2 years ago1
quantiseqr / immundeconv differences
Closed 2 years ago2
patched mcp counter dependencies
Updated 2 years ago
Modernize CI
Closed 2 years ago4
Documentation for mouse methods
Closed 2 years ago3
Add developer docs
Updated 2 years ago
Return missing genes for each tool
Updated 2 years ago1
add path to geneset for MCPCOUNTER
Updated 2 years ago2
Overview of new implementations
Closed 2 years ago7
get a 'no file found' error for deconvolute_quantiseq() with btotalcells = TRUE
Closed 2 years ago27
Addition of two new methods
Closed 2 years ago7
Add more recent methods?
Closed 2 years ago4
No object found while running deconvolute
Closed 2 years ago8
xCell expected cell types
Updated 2 years ago3
Add FAQ
Updated 2 years ago1
Warning pops up in the "Getting started" section
Updated 2 years ago1
Error in if (max(Y) < 50) { : missing value where TRUE/FALSE needed - CIBERSORT
Updated 2 years ago9
xcell reporting all zeros
Updated 2 years ago5
Cibersort deconvolute error
Updated 2 years ago3
conda install errors
Closed 3 years ago4
Improve github issue experience
Closed 3 years ago
Can we merge two signature matrices: one from scRNA with the LM22?
Closed 3 years ago1
Error in deconvolute_cibersort
Closed 3 years ago2