Shuai Chen's repositories
naive_seq_align
A simple sequence alignment
SV_genotyping
This repo documents the population genotyping of structural variations (SVs) using tea graph pangenome
Telomeres_and_Centromeres
This is a method to find telomeres and centromeres in plants.
Genome-annotation-pipeline
Genome annotation
LocusZooms
Make LocusZoom-like plots with your own LD matrix.
metabolomic_selection_for_enhanced_fruit_flavor
Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"
learn-data-structures
数据结构（C语言描述）学习笔记
NAM-genomes
Detailed bioinformatics scripts and methods used in the NAM genome paper.
leetcode
LeetCode in pure C
seq-align
Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
Data-Structure
《数据结构》-严蔚敏.吴伟民-教材源码与习题解析
Bioinfo_LeetCode
让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on
HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
gggenomes
A grammar of graphics for comparative genomics
FunFinder_Pangenome
Data analysis of Funannotate and Orthofinder outputs to Pangenome results
mummer-ggplot
Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.
locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
graphlayouts
new layout algorithms for network visualizations in R
table2itol
Generating iToL annotations from Spreadsheet or CSV files
xmatchview
🗻 Visualization of genome/gene sequence synteny
Synima
Synteny Imager
bioinformatics
tools for biolinux