Shuai Chen's repositories
DeepLearning-500-questions
深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系scutjy2015@163.com 版权所有，违权必究 Tan 2018.06
LocusZoom-Pipeline
LocusZoom Pipeline Project
manhattan_generator
Manhattan plot Generator
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
Centromere_synteny_project
How to identify genome-wide synteny with LASTZ alignment
ChrCoorScatterPlotR
R scatter plot code for both chromosome position of x-axis and y-axis
genome_plots
Genome wide, SV, CNV, SNV rainfall plots
genoPlotR_wrapper
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
gtex-pipeline
GTEx Consortium data production and analysis pipelines
mcmctree_tree_prep
making input tree for mcmctree
orthodotter
Synteny plots (oxford grid)
samplot
Plot structural variant signals from many BAMs and CRAMs
Sequence-manipulation
A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
synteny_mapper
A synteny mapping pipeline for linkage maps
syntenyPlotByR
plot genome alignment synteny