Sh1ne111

SV_genotyping

This repo documents the population genotyping of structural variations (SVs) using tea graph pangenome

Genome-annotation-pipeline

Genome annotation

metabolomic_selection_for_enhanced_fruit_flavor

Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"

mummer-ggplot

Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.

NAM-genomes

Detailed bioinformatics scripts and methods used in the NAM genome paper.

synvisio

SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.

naive_seq_align

A simple sequence alignment

PanMarker

Bioinfo_LeetCode

让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on

bioinformatics

tools for biolinux

Data-Structure

《数据结构》-严蔚敏.吴伟民-教材源码与习题解析

FunFinder_Pangenome

Data analysis of Funannotate and Orthofinder outputs to Pangenome results

gggenomes

A grammar of graphics for comparative genomics

graphlayouts

new layout algorithms for network visualizations in R

Guideline-for-Computational-Biology-and-Bioinformatics

HiCPlotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

JinfeiChen_scripts

learn-data-structures

数据结构（C语言描述）学习笔记

leetcode

LeetCode in pure C

lh3-snippets

locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

LocusZooms

Make LocusZoom-like plots with your own LD matrix.

MyBook

NAM_Pan_Genome_Analysis

seq-align

Fast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment

SVsFromGenomes

Synima

Synteny Imager

table2itol

Generating iToL annotations from Spreadsheet or CSV files

Telomeres_and_Centromeres

This is a method to find telomeres and centromeres in plants.

xmatchview

🗻 Visualization of genome/gene sequence synteny