Shuai Chen (Sh1ne111)

Sh1ne111

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Company:Agricultral Genomics Insititute at Shenzhen

Location:Shenzhen, China

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Shuai Chen's starred repositories

ThreadPool

A simple C++11 Thread Pool implementation

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collapse

Advanced and Fast Data Transformation in R

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LinuxC

听说C与Linux更搭配哦~ 内容包括:C基础 C++面向对象编程 基础数据结构 linux系统编程以及一些操作系统的相关知识

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pyseer

SEER, reimplemented in python 🐍🔮

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wgatools

Whole Genome Alignment Tools

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simuG

simuG: a general-purpose genome simulator

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ntSynt

Detecting multi-genome synteny using minimizer graph mapping

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bio_tools

Useful bioinformatic scripts

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KAML

:bicyclist: Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction

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SWIGG

A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

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G2P

G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluation measurements.

kmerDecoder

Extract kmers, skipmers, minimizers.

svsim

Simulation toolbox for structural variations.

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os-minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

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prophex

ProPhex – an exact k-mer index using Burrows-Wheeler Transform

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DMAP

Davids Map Alignment Program for comparing genetic and physical maps

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g3tools

An R packages for Genomics, quantGen, and popGen studies, especially for crop species.

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svgen

generate DNA sequence with Structural Variations from fasta format

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Genomic-Prediction

R-Scripts for Genomic Prediction

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sim_genome

Very simply and quickly simulate a genome based on a reference sequence and VCF file

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GenomicPrediction

rrBLUP genomic prediction and K fold cross-validation

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genome_variant_simulator

A simple tool to simulate genomes for compression experiment purposes

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