Sh1ne111

G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluation measurements.

Language:R10 2 6

kmerDecoder

Extract kmers, skipmers, minimizers.

Language:C++10 5 32

svsim

Simulation toolbox for structural variations.

Language:PythonNOASSERTION900

CDKAM

Language:C++9 3 6

os-minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CNOASSERTION7 10

prophex

ProPhex – an exact k-mer index using Burrows-Wheeler Transform

Language:CMIT6 5 18

DMAP

Davids Map Alignment Program for comparing genetic and physical maps

Language:Perl5 30

g3tools

An R packages for Genomics, quantGen, and popGen studies, especially for crop species.

Language:R5 3 1

Cropgbm-genomebiology

Language:Gherkin300

svgen

generate DNA sequence with Structural Variations from fasta format

Language:JavaScript200

mash_sim

Language:Jupyter Notebook100

Genomic-Prediction

R-Scripts for Genomic Prediction

Language:HTML100

sim_genome

Very simply and quickly simulate a genome based on a reference sequence and VCF file

Language:C100

GenomicPrediction

rrBLUP genomic prediction and K fold cross-validation

Language:R100

soybean_genomic_prediction

Language:R1 10

genome_variant_simulator

A simple tool to simulate genomes for compression experiment purposes

Language:C++000