Oshlack's repositories
missMethyl
Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.
combes-organoid-paper
Analysis code and output for the Combes kidney organoid scRNA-seq paper https://doi.org/10.1186/s13073-019-0615-0
ec-dtu-pipe
Pipeline for performing differential transcript usage analysis using equivalence classes, transcript quantifications and/or exon counts
hashtag-demux-paper
Analysis code for "Benchmarking single-cell hashtag oligo demultiplexing methods" paper
oshlack.github.io
Oshlack Lab website
AllSorts_v1
An Acute Lymphoblasitc Leukemia B-Cell classifier
TobleroneApp
Desktop app incorporating https://github.com/oshlack/toblerone
ec-dtu-paper
Fast and accurate differential transcript usage by testing equivalence class counts
MINTIE-paper-analysis
Code for generating the figures and analyses presented in the MINTIE paper
pooled-parents-paper
Code and analysis for the pooled parents paper
xenanoseq
Nanopore demultiplexing, QC and alignment pipeline for xenograph RNA-seq experiments