Oshlack / speckle

R package for specialised analysis of single cell data

Oshlack/speckle Issues

ERROR: this R is version 4.1.3, package 'speckle' requires R >= 4.2.0
Updated 4 months ago
Prepare for upcoming Seurat v5 release
Updated 8 months ago
Removing batch effects
Updated 10 months ago
plotCellTypeProps Mean and propeller.ttest/propeller.anova means are different
Updated a year ago
How to fit the cell type proportion of spots in visium spatial transcriptome data?
Updated a year ago
Anova + visualization
Updated 2 years ago
Two-Way ANOVA?
Closed 2 years ago1
Tips after integration
Closed 2 years ago2
Using Speckle to assess differential abundance of cells from four different treatment groups within a cluster
Updated a year ago3
Compositional effects
Closed 2 years ago1
Package Citation?
Closed 4 years ago2