JunjuanZheng

BINP51

Coexpression_Proxies

lantern

Lantern官方版本下载 蓝灯 翻墙 代理 科学上网 外网 加速器 梯子 路由 - Быстрый, надежный и безопасный доступ к открытому интернету - lantern proxy vpn censorship-circumvention censorship gfw accelerator پراکسی لنترن، ضدسانسور، امن، قابل اعتماد و پرسرعت

Single-cell-atlas-of-sex-differences-and-androgen-effects

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

SATURN

scib-pipeline

Snakemake pipeline that works with the scIB package to benchmark data integration methods.

scGPT

BENGAL

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

comandos

Advanced visualizations for the comparison of single-cell datasets. Conceived as a SAMap add-on, but does not require it.

Primate-MTG-coexpression

Conserved coexpression at single cell resolution across primate brains

mr_sleep_traits_breast_cancer

T2D_AD_MR

Assessment of Causal Association Between Type 2 Diabetes and Alzheimer's Disease with Mendelian Randomisation. This project demonstrates Two-Sample Mendelian Randomisation (2SMR) pipeline with TwoSampleMR R library.

neuroblastoma

Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

RenalTumor

Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma

awesome-deep-learning-single-cell-papers

SingleCell

SCP

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

SAMap

SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

orthomap

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

scKirby

Automated ingestion and conversion of various single-cell data formats, within and across species

One2One

This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml

FormicidaeMolecularEvolution

Scripts and how-tos for comparative genomics work.

scFlow

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

CLpseudobulk

Pseudobulk analysis for scRNAseq with bootstrapping

MOVICS

Multi-Omics integration and VIsualization in Cancer Subtyping

CelltypeEvolution

Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases

Clash-for-Windows_Chinese

clash for windows汉化版. 提供clash for windows的汉化版, 汉化补丁及汉化版安装程序

scRNAIdent