JunjuanZheng's repositories
2020-August-Advanced-scRNAseq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
Analysis-Tutorials
bioinformatic analysis tutorials and pipelines
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bulk_RNA-Seq_Workflow_Snakemake
STAR, cufflinks, cluster, DESeq2, GO analysis
CellReportsManuscript
This repository contains scripts associated with the Cell Reports manuscript.
chipster-tools
Chipster analysis tool scripts
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
Immunologic_changes_with_chemotherapy_inTNBC
Code used for figure generation for "Changes in peripheral and local tumor immunity after neoadjuvant chemotherapy reshape clinical outcomes"
inferCC
Lung cancer 10X analysis
KDD20-tutorial
Tutorial on Automated Machine Learning at KDD 2020
Lee_et_al_2020_Nature
Repository for scripts used for analysis in Lee at al. 2020 "Hair-bearing human skin generated entirely from pluripotent stem cells."
metaworkflow
Online workflow guidelines for metabolomics
MOVICS
Multi-Omics integration and VIsualization in Cancer Subtyping
PaperWork-scRNA-GSE111527-mouseSVZ
Reanalyze of GSE111527 scRNA-seq data
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
scrna2019
supporting code for the multinomial single cell RNA-Seq paper
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
singleCellHaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Within_Subject
Codes for Within Subject Memory Encoding project
yipCat
yipCat package to realize some functional tools