JunjuanZheng's starred repositories
Clash-for-Windows_Chinese
clash for windows汉化版. 提供clash for windows的汉化版, 汉化补丁及汉化版安装程序
RenalTumor
Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
CelltypeEvolution
Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases
FormicidaeMolecularEvolution
Scripts and how-tos for comparative genomics work.
neuroblastoma
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
orthomap
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
CLpseudobulk
Pseudobulk analysis for scRNAseq with bootstrapping
Primate-MTG-coexpression
Conserved coexpression at single cell resolution across primate brains