zhenweiqian

BrainCellAtlas-reproducibility

Notebooks to reproduce the results of Brain Cell Atlas

QMP-Microbiome-CRC-confounders

Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"

CRC-multi-kingdom

This is the supplementary code for CRC-multi-kingdom

immune_cell_atlas

RMS-metadata

Codes for single-cell meta-data analysis of RMS

Grass-et-al-2024

admultiregion_analysis

Code repository for single-cell atlas of Alzheimer's disease progression across brain regions

sciNMF

Single-Cell Integration by Non-Negative Matrix Factorization

pan-B

These are scripts for pan-cacner B cells analyses.

mtDNA_mosaicism

myeloid

Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Single-Cell Pan-cancer analysis

SPATAC-seq

snapTotal-seq

drug-resistance

neuroimmune_interactome

fetal_lung_analysis

panVC

mvTCR

mvTCR_reproducibility

Reproducibility Repo for mvTCR paper

spatial-lung-fibrosis

Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.

scHolography

MafKO

Code for reproducibility of "Transcriptional specification of fetal to adult liver vascular functional zonation"

Arlotta_Lab_Chimeroids

UC_2024

Final version of the code used to pre-process the raw data and create figures and tables for the manuscript titled "Stem-like T cells are associated with the pathogenesis of ulcerative colitis in humans." by Yingcong Li, et al.

TOPOSCORE

Custom scoring of intestinal bacteria by the TOPOSCORE could represent a dynamic diagnosis tool of gut dysbiosis, that stratifies patients for microbiota-related interventions.

Dynamical-Network-Biomarker

动态网络标志物 Dynamical Network Biomarker

MaSC_aging

SKM_ageing_atlas

TopicVelo

TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems

amp2repertoire