Yoshiaki Yasumizu's starred repositories
lab-website-template
An easy-to-use, flexible website template for labs.
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
pytorch_mpiigaze_demo
Gaze estimation using MPIIGaze and MPIIFaceGaze
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
scHLAcount
Count HLA alleles in single-cell RNA-seq data
cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
napari-spatialdata
Interactive visualization of spatial omics data
symphonypy
Port of symphony algorithm of single-cell reference atlas mapping to Python
allelefrequencies
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
gene2probe
Pipeline for designing custom probes against human genes
ImmCellTyper
Cytof data analysis toolkit
ablang-util
util tools for ablang
cellxgene_VIP
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.