potulabe / symphonypy

Port of symphony algorithm of single-cell reference atlas mapping to Python

Symphonypy

Porting of Symphony R package to Python

• Installation and usage
• Benchmarking

Installation and usage

Please visit Read the Docs documentation web page.

Benchmarking

• Harmony (R) vs Harmonypy benchmarking: benchmarking/Benchmarking_harmony_PBMC_Satija.ipynb
• Symphony (R) vs Symphonypy benchmarking: benchmarking/Benchmarking_symphony_PBMC.ipynb