yaozhong

URnano

Nanopore base-calling from a perspective of instance segmentation

methBERT

bert_investigation

BERT analysis

CL4PHI

deepIntraSV

UNet model for segmenting intra-bin structural variants with base-pair read-depth data of WGS

mexico_workshop_nanopore_hands_on

Materials of hands-on section for Mexico workshop 2019

AS

weighted-EM for AS

daily_widget

daily widget

deeplift

Public facing deeplift repo

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

DLRec

Reconstruction of high read-depth singals from low-depth whole genome sequencing data using deep learning

SCLSC

Supervised contrastive learning for single-cell annotation

dna_feat_explore

ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

niida_sim_dl

ns_profiling

modeling nucleotide sequencing

nucleus

Python and C++ code for reading and writing genomics data.

nvidia-docker

Build and run Docker containers leveraging NVIDIA GPUs

phyLoSTM

playground

Play with neural networks!

statistics-for-data-scientists

Code and data associated with the book "Statistics for Data Scientists: 50 Essential Concepts"

techNotes

tensorflow

Open source software library for numerical computation using data flow graphs.

yaozhong.github.io

technical Notes