Shuangbin Xu's repositories
MetaMicrobiome
MetaMicrobiome: an R package for the meta-analysis and visualization of microbiome.
100-Days-Of-ML-Code
100 Days of ML Coding
scikit-plot
An intuitive library to add plotting functionality to scikit-learn objects.
ArticleYAMLTemplate
:memo:This repository was designed to save the Rmarkdown YAML template for SCI or Others.
barcoding
Lima - Demultiplex Barcoded PacBio Samples
BioFtParse
:hammer: tookits to parse multiple format files in bioinformatics
clinker
Gene cluster comparison figure generator
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
clusterProfiler_docker
Docker Containers For clusterProfiler Env
commontools
:memo: common scripts to save time
enrichplot
Visualization of Functional Enrichment Result
hands-on-nltk-tutorial
The hands-on NLTK tutorial for NLP in Python
iggtree
interactive tree viewer using ggtree + shiny
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
seqmagick
sequence manipulation
SNFtool
:exclamation: This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion