Beast code in Giters

Shuangbin Xu's starred repositories

CosMx-Analysis-Scratch-Space

This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.

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Linear-Algebra-Left-Undone

线性代数：未竟之美

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vim-jukit

Jupyter-Notebook inspired Neovim/Vim Plugin

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tidyverse.org

Source of tidyverse.org

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SAHMI

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fanyi

Translate Words or Sentences via Online Translators

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vim

The official Vim repository

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ggsc

🧠 Visualizing Single Cell and Spatial Transcriptomics

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gcem

A C++ compile-time math library using generalized constant expressions

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stats

A C++ header-only library of statistical distribution functions.

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hdrcde

Highest density regions and conditional density estimation

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rcpp-api

Source for the Unofficial Rcpp API Documentation

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universalmotif

Motif manipulation functions for R.

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mlpack

mlpack: a fast, header-only C++ machine learning library

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BPCells

Scaling Single Cell Analysis to Millions of Cells

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pkg-dev-masterclass

Materials for the Package Development Masterclass workshop held at posit::conf(2023)

CC-BY-SA-4.05900

OSCA

The package wrapping the book, for deployment via the Bioconductor build system.

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rspatial-terra-web

rspatial website using terra

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emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

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ggtricks

Easily create sector charts with ggplot2

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SpatialFeatureExperiment

Extension of SpatialExperiment with sf

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awesome_spatial_omics

tools and notes for spatial omics

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DGE_workshop

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squidpy

Spatial Single Cell Analysis in Python

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tidytable

Tidy interface to 'data.table'

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tabby

Self-hosted AI coding assistant

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IGGdb

Database of genomes integrated from the gut microbiome and other environments

GPL-3.04400

Chinese-LLaMA-Alpaca

中文LLaMA&Alpaca大语言模型+本地CPU/GPU训练部署 (Chinese LLaMA & Alpaca LLMs)

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segment-anything

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

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RabbitTClust

RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches

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