Shuangbin Xu's starred repositories
CosMx-Analysis-Scratch-Space
This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
Linear-Algebra-Left-Undone
线性代数:未竟之美
tidyverse.org
Source of tidyverse.org
universalmotif
Motif manipulation functions for R.
pkg-dev-masterclass
Materials for the Package Development Masterclass workshop held at posit::conf(2023)
rspatial-terra-web
rspatial website using terra
emg-viral-pipeline
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
SpatialFeatureExperiment
Extension of SpatialExperiment with sf
awesome_spatial_omics
tools and notes for spatial omics
Chinese-LLaMA-Alpaca
中文LLaMA&Alpaca大语言模型+本地CPU/GPU训练部署 (Chinese LLaMA & Alpaca LLMs)
segment-anything
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
RabbitTClust
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches