wurmlab / afra

Genome Annotation for the Masses

http://afra.sbcs.qmul.ac.uk

wurmlab/afra Issues

Migrate older tests to Jasmine 2.0
Closed 7 years ago6
Edit Track should resize when genes are removed from the track
Closed 4 years ago
How do users communicate problems?
Updated 9 years ago
Appropriate licensing and copy right.
Updated 9 years ago2
Ability to hide features that extend beyond a specified window
Updated 9 years ago2
Handle case where an invalid coordinate is passed to `transcriptToCDNA` or `CDNAToTranscript`
Updated 9 years ago1
Allow alternate translation table
Updated 9 years ago
Undo / redo stack is a potential memory leak
Closed 9 years ago
Context menu items are clickable despite being disabled.
Updated 9 years ago2
Editing will fail if strand not set.
Updated 9 years ago
Ability to annotate readthrough stop signals.
Updated 9 years ago
Reading frame is not correctly highlighted.
Updated 9 years ago1
Info popup from track labels.
Updated 9 years ago1
A way to flip your view so that the right to left strand becomes the left to right strand.
Updated 9 years ago
typo in the readme
Closed 9 years ago1
Genome Dashboard
Updated 9 years ago1
Ability to skip a task.
Updated 9 years ago
Ability to add comments before submitting curation.
Updated 9 years ago
If hitting 'Done' fails (say if server is down), user is still shown the "Thank you" modal
Updated 9 years ago
Left of toolbar should mention "curate - <name of gene model>"
Updated 9 years ago
Add functionality to set exon boundaries to one from a track of evidence.
Updated 9 years ago
Add functionality for extending to downstream/upstream acceptor/donor splice sites.
Updated 9 years ago
Features in all tracks need a context menu.
Updated 9 years ago
If more than one longest ORF, 'use longest orf' menu option could switch b/w them.
Updated 9 years ago
Draw a "Drop gene model here" marker around edit track.
Updated 9 years ago
Add keyboard shortcuts.
Updated 9 years ago
See if Cmd-z/Cmd-Shift-z or Ctrl-z/Ctrl-y can be used for undo redo.
Updated 9 years ago
Ensure context menu can be opened via keyboard.
Updated 9 years ago1
If an annotation is selected, Shift + arrow keys should select next feature.
Updated 9 years ago
Unit tests for annotation editing functionality
Updated 9 years ago3
Add js tests to travis build
Updated 9 years ago1
Set up a code coverage tool
Updated 9 years ago1
Rightclick on exon 2 while resizing exon 1
Updated 9 years ago
automatic display of read number still visible when RNASeq track not visible
Updated 9 years ago
Resize exon is very slow when zoomed to base-pair level
Updated 9 years ago1
Sync edits with server
Updated 9 years ago
merge transcript fails if none of the input transcripts contain any CDS
Closed 9 years ago2
`mergeTranscript` duplicates sub-features if single transcript is passed to multiple times.
Closed 9 years ago3
Rake should fail if node is not found
Closed 9 years ago
Edit track doesn't accept drag-n-dropped transcript if transcript stretches beyond visible region.
Closed 9 years ago1
Transcript that is being dragged or the exon that is being resized overlaps the sidebar
Closed 9 years ago4
Sometimes pointer does not change into arrow when trying to resize exon
Closed 9 years ago1
highlight reading frame
Closed 9 years ago
snap to nucleotide boundaries when resizing exon and zoomed in to base pair level
Closed 9 years ago
search track empty after zooming in
Closed 9 years ago2
Error message when searching reference sequence
Closed 9 years ago1
gene model become non-editable after a glitch while zooming out
Closed 10 years ago2
Pointer position is inconsistent with the exon being dragged to the edit track
Closed 10 years ago
Dockerfile building - Ruby 2.0 vs 2.1
Closed 10 years ago3
Non Deterministic order of Dir['routes/*.rb'] raises Error 401
Closed 10 years ago4