wurmlab / sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

https://sequenceserver.com

wurmlab/sequenceserver Issues

genome fastas beginning with Ns aren't correctly identified
Closed 2 months ago1
Advanced params help modal should be bigger - take up more of the page so we don't need to scroll as much
Updated 2 months ago
When exporting "Kablammo" plot as SVG or PNG, would be useful to have the query index & name appended
Updated 2 months ago1
Remember user defaults
Closed 3 months ago1
Number of queries stats in job.yaml
Closed 4 months ago
how to use tree structure of database lists in docker command
Closed 4 months ago1
Sidebar Element Click Causes Exception and User Work Loss
Closed 4 months ago2
Selection issues
Updated 5 months ago3
Job 404 should not throw an exception
Closed 6 months ago
Migrate testing from Travis to Github Actions
Closed 6 months ago1
NoMethodError for SequenceServer.makeblastdb.any_to_format?
Closed 6 months ago1
xml import is unclear
Updated 6 months ago1
installation problems on Ubuntu 23.10
Closed 6 months ago2
Make it easier to have custom title and text on page
Updated 6 months ago
Word cloud of hit names?
Updated 6 months ago1
version bump -> NCBI 2.2.15
Updated 7 months ago
"Advanced parameters:" label in search interface should not be a hyperlink
Closed 7 months ago1
Protein domains in protein queries
Closed 7 months ago2
display issue in Safari 16.5.2 but not Chrome
Updated 7 months ago
Improve labels of titles in result page
Closed 7 months ago
Tooltip positioning broken
Updated 8 months ago
Intercept badly formatted FASTA query
Closed 8 months ago
Update GH actions to use the latest version of BLAST
Closed 8 months ago4
The local sequenceserver can't work with version 2.1.0.
Closed 9 months ago1
docker build for 2.1.0 release fails
Closed 10 months ago2
gh actions want js test to run automatically
Updated 10 months ago1
closed
Closed 10 months ago
sharing email text
Updated a year ago
database_widget: tree breaks edit / back button
Updated a year ago
Previous query / next query
Updated a year ago
RSpec testing wants to be robust to capybara flakiness
Updated a year ago
Improve coverage for recurring UI issues
Updated a year ago
Sharetocloud
Closed a year ago
Error msg when trying to download the hits FASTA files
Closed a year ago2
Add R API & usage example
Updated a year ago
Results summary
Updated a year ago
Alignment download not necessarily happening
Closed a year ago1
Unable to start container with port mapping
Closed a year ago1
Back button leads to frozen submission interface
Closed a year ago
BLAST is not working
Closed a year ago1
BLAST is not working
Closed a year ago1
Integrating with JBrowse2
Closed a year ago1
NoMethodError while running sequenceserver
Closed a year ago1
Donwload fasta file - downloads the entire chromosome
Updated a year ago
BLAST failed abruptly (exit status: 3)
Closed a year ago1
Why is config.rb invalid after modification?
Closed a year ago1
System error: BLAST failed abruptly (exit status: 135). Most likely there is a problem with the BLAST+ binaries.
Closed 2 years ago6
System error in blast
Closed 2 years ago1
sequenceserver -m, -l, -s, etc. break on blastdbcmd call
Closed 2 years ago3
js version bumps
Updated 2 years ago