WikiPathways's repositories
pathway-figure-ocr
Extracting gene sets from published pathway figures
rWikiPathways
R package for WikiPathways API
wikipathways.github.io
GitHub pages for GPML-Repo
wikipathways-database
WikiPathways Database
SARS-CoV-2-WikiPathways
Temporary repository of RDF of selected pathways from WikiPathways, supporting the Wikidata bot.
SPARQLQueries
Queries for the WikiPathways SPARQL endpoint.
wikipathways-curation-template
Template repository for setting up a repo with pathway curation is a subset of pathways.
tool_pathway_viewer
Pathway viewer and highlighter hosted on WMCS
wikipathways-data-release
Monthly data release
WikiPathwaysCurator
Unit tests that validate the WikiPathways content and support the curation of the knowledge base.
pfocr-database
Jekyll setup and database for the Pathway Figure OCR project
academy-templates
Repository containing all the pathway templates (starter pathways) used in the WikiPathways Academy
gpml-sync-action
under dev
new-subdomain
Legacy support of "new" subdomain
pfocr-postprocessing-scripts
Scripts to process and publish new batches from the PFOCR pipeline
pyzenodo4wpdata
A pyzenodo library for archiving versions of WikiPathways data files
wikipathways-assets
Accessory files generated downstream of approved GPMLs
wikipathways-faq
Help documentation for the WikiPathways project
wikipathways-pmcfigurebot
Query figures indexed by PubMed Central and collect metadata