WikiPathways

pvjs

JavaScript-based pathway viewer and editor

pathway-figure-ocr

Extracting gene sets from published pathway figures

cxsd

Streaming XSD parser and XML parser generator with TypeScript output

pywikipathways

Python Client Package for WikiPathways

cytoscape-wikipathways-app

WikiPathways app for Cytoscape to open and access pathways from WikiPathways

gpml2pvjson-js

Convert GPML (WikiPathways XML format) to JSON-LD

reactome2gpml-converter

Converts Reactome pathways to GPML format

wikipathways-curation-template

Template repository for setting up a repo with pathway curation is a subset of pathways.

bioentities

Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.

blaubook-subdomain

pathway-curation-tasks

Issue tracker and project board to organize prioritized pathway curation tasks

.github

A special repo for org templates and other goodies

academy-templates

Repository containing all the pathway templates (starter pathways) used in the WikiPathways Academy

BioThings_Explorer_PFOCR_prioritization

PFOCR for prioritization/clustering of BioThings Explorer (BTE) TRAPI results

famplex

Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

iem-subdomain

java-bots

Automatic bots for WikiPathways

micronutrients-subdomain

new-subdomain

Legacy support of "new" subdomain

pfocr-database-jekyll

Website for the Pathway Figure OCR database

pfocr-postprocessing-scripts

Scripts to process and publish new batches from the PFOCR pipeline

rarediseases-subdomain

releases

renalgenomics-subdomain

tools-subdomain

virtuoso-httpd-docker

wikipathways-faq

Help documentation for the WikiPathways project

wikipathways-rdf

Repository where the WikiPathways RDF will be generated based on the new libGPML library

wormbase-subdomain

wpi

test