vreuter

caravel

A web interface to looper

cpython

The Python programming language

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

divvy

Standardized computing resource configuration

dnameth_pipelines

DSLsofMath

Domain Specific Languages of Mathematics

example_peps

Some simple examples of PEP-compatible projects

gcb-r-workshop

Materials for student-led R review workshop held for matriculating GCB students at the University of Pennsylvania

geofetch

Builds a PEP from SRA or GEO accessions

git

Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.

HaTeX

The Haskell LaTeX library.

java-callgraph

Programs for producing static and dynamic (runtime) call graphs for Java programs

jbibtex

Java BibTeX API

mkdocs

Project documentation with Markdown.

mkdocs-databio

Lab theme for mkdocs

omictools

Genomics and epigenomics types and tools, in Scala

os-lib

OS-Lib is a simple Scala interface to common OS filesystem and subprocess APIs

pararead

pepenv

PEP environment configuration

projectInit

R project initialization

pydoc-markdown

Create Python API documentation in Markdown format.

quickcheck

Automatic testing of Haskell programs.

refgenie

Create a standardized format for reference genome files and indexes

refgenieserver

Serves a web interface and RESTful API for refgenie access to reference genome assets.

scratch571

BIOL571 experimental implementation

simpleCache

Quick R caching for reproducible big data projects

stable571

BIOL571 group project, stable(r) implementation version

TatSu

竜 TatSu generates Python parsers from grammars in a variation of EBNF

validation

A data-type like Either but with an accumulating Applicative

veracitools

Testing utilities