Vince's repositories
haskell-exercises-ThinkingFunctionally-RichardBird
Haskell exercises, Thinking Functionally with Haskell by Richard Bird
python-type-stubs
A set of type stubs for popular Python packages. These are works in progress from the Microsoft Python team and others, with the intent that they are contributed to typeshed or to the associated packages once sufficiently complete.
aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
bioformats2raw
Bio-Formats image file format to raw format converter
cats
Lightweight, modular, and extensible library for functional programming.
docs.scala-lang
The Scala Documentation website
gerlich_jupyter
Base container preinstalling all internally used NGS and image analysis tools.
hicognition
A visual exploration and hypothesis testing tool for 3D genomics
hypothesis
Hypothesis is a powerful, flexible, and easy to use library for property-based testing.
looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
looptrace-loci-vis
Visualisation (in `napari`) of locus-specific spots from looptrace
napari-docs
Documentation for napari (other than API docs)
netcdf-java
The Unidata netcdf-java library
npe2
napari plugin engine v2
nuclei-vis-napari
Visualisation (in `napari`) of nuclei from looptrace
numpydoc_decorator
Build numpy-style docstrings programmatically and apply them using a decorator.
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
poetry-core
Poetry PEP 517 Build Backend & Core Utilities
scala-csv
CSV Reader/Writer for Scala
scalacheck
Property-based testing for Scala
spotfishing
Finding FISH spots
upickle
uPickle: a simple, fast, dependency-free JSON & Binary (MessagePack) serialization library for Scala