vreuter

autoquiz

Self-quizzing and representation of reading knowledge as questions and answers

ngstk-scala

NGS analysis toolkit, in Scala

arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

csv

CSV Reading and Writing

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

fgbio

Tools for working with genomic and high throughput sequencing data.

folderfun

Manage distributed input and output data locations with folder functions

groups

Group and Abelian group typeclasses

gwasvcf

imslp-scrape

Scraping Library for http://imslp.org/wiki/Main_Page

knitr_case_studies

Inference case studies in knitr

ngstk

Next-generation sequencing toolkit

nixpkgs

Nix Packages collection

OligoMiner

Genome-scale design tool for oligo hybridization probes

pdffigures2

Given a scholarly PDF, extract figures, tables, captions, and section titles.

pepspec

PEP specification

poetry2nix

Convert poetry projects to nix automagically [maintainer=@adisbladis]

python_bootcamp_2020

pytorch-CycleGAN-and-pix2pix

Image-to-Image Translation in PyTorch

PyVCF

A Variant Call Format reader for Python.

quickcheck-higherorder

QuickCheck extension for higher-order properties

r-hedgehog

Release with confidence, state-of-the-art property testing for R.

refgenconf

ruby

The Ruby Programming Language [mirror]

sbt-class-diagram

sbt plugin to create a class diagram

test-fun

Representation of higher-order functions for property testing

testthat

An R 📦 to make testing 😀

ubiquerg

Tools for work (erg) everywhere (ubique)

vcfhelper

This repository contains scripts relating to analyzing vcf files