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Databio (databio)

Databio

databio

Geek Repo

Solving problems in computational biology

Location:University of Virginia

Home Page:https://databio.org

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Databio's repositories

pepatac

A modular, containerized pipeline for ATAC-seq data processing

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pypiper

Python toolkit for building restartable pipelines

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GenomicDistributions

Calculate and plot distributions of genomic ranges

Language:RLicense:NOASSERTIONStargazers:25Issues:16Issues:94

bulker

Manager for multi-container computing environments

Language:Jupyter NotebookLicense:BSD-2-ClauseStargazers:24Issues:15Issues:71

bedshift

Bedfile perturbation tool

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geniml

Genomic interval machine learning

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sciquill

Author academic documents in markdown

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COCOA

Annotating epigenetic variation among samples with region sets in R

Language:RLicense:NOASSERTIONStargazers:10Issues:11Issues:36

yacman

YAML configuration manager

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hub.bulker.io

Bulker registry

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bedbase

Aggregate, analyze, and serve genomic regions.

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markmeld

A Python package for melding markdown content and YAML structured data

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logmuse

Small logging setup package

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mm_templates

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bedhost

API and UI for BEDbase

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gtars

Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - our genomic machine learning python package.

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lucidoc

Automatic python documentation in markdown for mkdocs

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schema.databio.org

Repository of JSON-schemas

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bbconf

Configuration package for bedbase project

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bedboss

Python pipeline for processing BED files for BEDbase

Language:PythonLicense:BSD-2-ClauseStargazers:1Issues:2Issues:42

bedbuncher

A pipeline for bedsets

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bedstat

pipeline for obtaining statistics about bed files

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dockerfiles

Sheffield lab dockerfiles

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fasta-id

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henge

Keeper of DRUIDs: a Python interface to Decomposable Recursive UIDs

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uniwig

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bedhost-ui

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bedmaker

pipeline to convert bigWig, bedGraph and other file types into BED format

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region2vec_eval

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rust-gc-count

A tool for generating wiggle files of GC from DNA written in Rust.

License:Apache-2.0Stargazers:0Issues:0Issues:0