vmikk

metagMisc

Miscellaneous functions for metagenomic analysis.

PhyloNext

A pipeline for phylogenetic diversity analysis of GBIF-mediated data

NextITS

A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

BatchBlaster

Nextflow-based BLAST pipeline

dadaist2

🎨 dadaist2 - Highway to R

biodiverse-docker

Docker and Singularity images to run Biodiverse software

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

atlas

ATLAS - Three commands to start analysing your metagenome data

balifam

Protein multiple sequence alignment benchmark

bioconda-recipes

Conda recipes for the bioconda channel.

dadasnake

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

itsxpress

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

JuliaDataScience

Book on Julia for Data Science

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

NetCoMi

Network Comparison for Microbial Compositional Data

nextflow

A DSL for data-driven computational pipelines

nextflow-example

A simple DSL2 workflow: tutorial

nftower_test

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

phylonext-ws

PhyloNext_manuscript

Data and scripts accompanying the PhyloNext manuscript

PipeCraft

pipecraft-1

sh_matching_pub

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Soil_Zoology_2021

Материалы мастер класса по анализу данных метабаркодинга (VII полевая школа по почвенной зоологии и экологии)

spectralR

Spectral visual analysis of user-defined areas. Vignette: https://olehprylutskyi.github.io/spectralR/

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun metagenomic data

tools

Python package with helper tools for the nf-core community.