Giters
vmikk
/
metagMisc
Miscellaneous functions for metagenomic analysis.
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Stargazers:
44
Watchers:
3
Issues:
31
Forks:
11
vmikk/metagMisc Issues
error in function phyloseq_filter_prevalence
Closed
6 months ago
Comments count
14
phyloseq_filter_prevalence, non zero dimension
Closed
6 months ago
Comments count
1
Error in if (class(dis) %in% "phylo") { : the condition has length > 1
Updated
6 months ago
Comments count
1
how to install 0.0.4 version
Closed
6 months ago
Comments count
1
Rewrite `prevalence` function using `data.table`
Closed
a year ago
Comments count
1
Prevalence function missing from install
Closed
a year ago
Comments count
3
phyloseq_replace_zero and phyloseq_transform_aldex_clr
Closed
a year ago
Comments count
1
[adonis_pairwise function] Deprecation notice: Replace vegan::adonis with vegan::adonis2
Closed
a year ago
Comments count
2
phyloseq_inext -- error in rbind
Updated
a year ago
Comments count
2
phyloseq_inext: merge fail
Updated
a year ago
Comments count
1
Error in validObject(.Object) : invalid class “otu_table” object: OTU abundance data must have non-zero dimensions.
Closed
a year ago
Comments count
6
phyloseq_filter_prevalence error
Closed
2 years ago
phyloseq_to_df error: Sample names
Closed
3 years ago
Comments count
4
Average rarified OTU/ASV table after multiple rarefaction
Closed
3 years ago
Comments count
3
Rewrite `get_max_taxonomic_rank` using `data.table`
Updated
3 years ago
Error in validObject(.Object) : invalid class “otu_table” object: OTU abundance data must have non-zero dimensions
Closed
3 years ago
Comments count
2
shared otus function problem
Closed
4 years ago
Comments count
4
`dissimilarity_to_distance` - error if number of OTUs > number of samples
Updated
4 years ago
Problem installing vmikk/metagMisc
Closed
4 years ago
Comments count
5
phyloseq_mult_raref_avg: Perform rarefaction and average relative OTU abundance issue
Closed
4 years ago
Comments count
7
Prevalence plots (total OTU abundance vs OTU prevalence)
Closed
4 years ago
Comments count
1
Error in dimnames(x) when trying to normalize OTU table in a phyloseq object
Closed
4 years ago
Comments count
2
Implement robust alternative to SES
Updated
5 years ago
information about phyloseq_mult_raref
Closed
5 years ago
Comments count
2
Purrr vs Plyr
Updated
5 years ago
Comments count
1
Logo proposal
Closed
6 years ago
Comments count
2
Efficient rarefaction
Updated
6 years ago
Comments count
1
Parallelize plyr-dependent functions
Updated
7 years ago
Comments count
1
Tests needed
Updated
7 years ago