vmikk

anova

Shiny application to conduct heteroscedasticity consistent ANOVA (in Russian)

ggord

a take on ordination plots using ggplot2

phylonest

Equivalent numbers for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

ALDEx2

ALDEx_bioc

ALDEx_bioc is the working directory for updating bioconductor

amplispike

Analysis of amplicon sequencing data with synthetic spike-in standards

atlas

ATLAS - Three commands to start analysing your metagenome data

balifam

Protein multiple sequence alignment benchmark

bayesian-basics

:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.

brms

brms R package for Bayesian generalized non-linear multilevel models using Stan

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dadasnake

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

itsxpress

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

JuliaDataScience

Book on Julia for Data Science

NetCoMi

Network Comparison for Microbial Compositional Data

nextflow

A DSL for data-driven computational pipelines

nextflow-example

A simple DSL2 workflow: tutorial

PARTITIONR

PARTITIONR Package

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

phyr

Collect and update functions about phylogenetic analyses

Rarefaction

Rarefaction scripts

rush

A cross-platform command-line tool for executing jobs in parallel

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

Soil_Zoology_2021

Материалы мастер класса по анализу данных метабаркодинга (VII полевая школа по почвенной зоологии и экологии)

ufits

Fungal ITS Clustering Package

vmik

Vladimir Mikryukov's miscellaneous R functions