vd4mmind

vivekdas.github.io

Trying to build a webiste from GitHub using pages

vd4mmind

Config files for my GitHub profile.

Colab

Testing the googleColab for some research gigs

AKITA_LCM_RNASeq_Treatment

This study includes 54 mouse kidney samples stratified into 9 groups based on disease, treatment, and genotype explanatory variables. The table below summarizes the experimental design.

scptest_colab

Testing the SCP pipeline in Google Colab

sgRNA_library

This repository contains the Google Colab notebook for single guide RNA library characterization

awesome-deep-learning-single-cell-papers

TSCAN

Clone of the Bioconductor repository for the TSCAN package.

bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq

plantmetaBolGCMS

code repo for the Plant Science paper published on GC-MS

Artificial-Intelligence-Deep-Learning-Machine-Learning-Tutorials

A comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - rapidly expanding into areas of AI/Deep Learning / Machine Vision / NLP and industry specific areas such as Climate / Energy, Automotives, Retail, Pharma, Medicine, Healthcare, Policy, Ethics and more.

mars

Discovering novel cell types across heterogenous single-cell experiments

genomics

Scripts, utilities and programs for genomic bioinformatics.

scCellTypeAnnotation

This repository will keep populating paper links and tool names that are currently in pre-print stage or published for Cell Type Identification, Annotation and Labeling.

multiOmicsIntegration

Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics

hypeR-workshop

Efficient, Scalable, and Reproducible Enrichment Workflows

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

E-MTAB-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

singleCellDataSets

This is a repository for all the single cell datasets that I am accuring from public repositories

scDataviz

scDataviz: single cell dataviz and downstream analyses

R_hacks

Simple commands to make coding in R easier!

PHATE

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

Single-cell-RNA-sequencing-of-human-kidney

R-code used for single-cell RNA-Seq analysis of kidney data.

scRNAseq_Benchmark

Bench-marking classification tools for scRNA-seq data

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group

SingleCellExperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

scRNAseq_cell_cluster_labeling

Scripts to run and benchmark scRNA-seq cell cluster labeling methods

SCMarker

Marker gene selection from scRNA-seq data

swirl_courses

:mortar_board: A collection of interactive courses for the swirl R package.