ivivek87's repositories
TENxGenomics
Interface to 10x Genomics' 1.3 m single cell data set
Glimma
Glimma R package
ggraph
Grammar of Graph Graphics
awesome-10x-genomics
List of tools and resources related to the 10x genomics GEMCode/Chromium system
LRSIM
10x Genomics Reads Simulator
modules
Replacing packages: An alternative module system for R
covmat_tcga
Coverage matrices for expressed regions in the TCGA data
biotools
A list of useful bioinformatics resources
variant-filter
A false-positive filter for variants called from massively parallel sequencing
vivlib
Useful wrappers and functions for RNA-Seq analysis
SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
perceptions-1
Base R version of https://github.com/zonination/perceptions
RNAseq-workflow
A repository for setting up a RNAseq workflow
Learning-Python
:man_student: Script scraps. Most Basics + Few Advance
docker-longranger
Docker File for Running 10X Genomics Long Ranger Aligner
mutation_analysis_scripts
day to day activity for mutation data
Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-
Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016
gopca-demos
GO-PCA demo notebooks
SOMexample
Website: https://iamciera.github.io/SOMexample/
gplots
:exclamation: This is a read-only mirror of the CRAN R package repository. gplots — Various R Programming Tools for Plotting Data
MLAlgorithms
Minimal and clean examples of machine learning algorithms
PythonDataScienceHandbook
Jupyter Notebooks for the Python Data Science Handbook
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
SRA2R
SRA2R, a package to import SRA data directly into R
perceptions
Perceptions of Probability and Numbers
phtools
various tools. Mostly shell, perl and R
ChIP-Seq_auto
To create an auto aligner for ChIP-Seq data
maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.